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920c8b82d5
- Add volume sizes to Activity Monitor feature description - Add Volume sizes feature with per-volume breakdown tooltip - Add JUPYTERHUB_ACTIVITYMON_VOLUMES_UPDATE_INTERVAL config option
484 lines
22 KiB
Markdown
484 lines
22 KiB
Markdown
# Stellars JupyterHub for Data Science Platform
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[](https://kolomolo.com)
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[](https://www.paypal.com/donate/?hosted_button_id=B4KPBJDLLXTSA)
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Multi-user JupyterHub 4 deployment platform with data science stack, GPU support, and NativeAuthenticator. The platform spawns isolated JupyterLab environments per user using DockerSpawner, backed by the [stellars/stellars-jupyterlab-ds](https://hub.docker.com/r/stellars/stellars-jupyterlab-ds) image (from [stellars-jupyterlab-ds](https://github.com/stellarshenson/stellars-jupyterlab-ds) project).
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## Features
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- **GPU Auto-Detection**: Automatic NVIDIA CUDA GPU detection and configuration for spawned user containers
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- **Notification Broadcast**: Admin broadcast to all active servers via `/hub/notifications`. Supports six notification types, 140-character limit. Requires [jupyterlab_notifications_extension](https://github.com/stellarshenson/jupyterlab_notifications_extension)
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- **User Self-Service**: Users can restart their JupyterLab containers and selectively reset persistent volumes (home/workspace/cache) without admin intervention
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- **Admin Volume Management**: Admins can manage any user's volumes directly from the admin panel via database icon button in each user row
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- **Docker Access Control**: Group-based access via `docker-sock` (container orchestration) and `docker-privileged` (full container privileges)
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- **Isolated Environments**: Each user gets dedicated JupyterLab container with persistent volumes via DockerSpawner
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- **Native Authentication**: Built-in user management with NativeAuthenticator supporting optional self-registration (`JUPYTERHUB_SIGNUP_ENABLED`) and admin approval. Authorization page protects existing users from accidental discard - only pending signup requests can be discarded
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- **Admin User Creation**: Batch user creation from admin panel with auto-generated mnemonic passwords (e.g., `storm-apple-ocean`). Credentials modal with copy/download options
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- **Shared Storage**: Optional CIFS/NAS mount support for shared datasets across all users
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- **Idle Server Culler**: Automatic shutdown of inactive servers after configurable timeout (default: 24 hours). Frees resources when users leave servers running
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- **Activity Monitor**: Admin-only dashboard showing real-time CPU/memory usage, volume sizes with per-volume breakdown, 3-state status indicator (active/inactive/offline), and historical activity scoring with exponential decay
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- **Production Ready**: Traefik reverse proxy with TLS termination, automatic container updates via Watchtower
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## User Interface
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**User Control Panel**
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User control panel with server restart and volume management options.
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**Volume Management**
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Access volume management when server is stopped.
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**Volume Selection**
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Select individual volumes to reset - home directory, workspace files, or cache data.
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**Admin Notification Broadcast**
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Admin panel for broadcasting notifications to all active JupyterLab servers.
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**New User Credentials**
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Admin creates users via Add Users form - credentials modal displays auto-generated mnemonic passwords.
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## Architecture
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```mermaid
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graph TB
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User[User Browser] -->|HTTPS| Traefik[Traefik Proxy<br/>TLS Termination]
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Traefik --> Hub[JupyterHub<br/>Port 8000]
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Hub -->|Authenticates| Auth[NativeAuthenticator]
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Hub -->|Spawns via| Spawner[DockerSpawner]
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Spawner -->|Creates| Lab1[JupyterLab<br/>alice]
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Spawner -->|Creates| Lab2[JupyterLab<br/>bob]
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Spawner -->|Creates| Lab3[JupyterLab<br/>charlie]
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Lab1 --> Vol1[Volumes<br/>home/workspace/cache]
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Lab2 --> Vol2[Volumes<br/>home/workspace/cache]
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Lab3 --> Vol3[Volumes<br/>home/workspace/cache]
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Lab1 --> Shared[Shared Storage<br/>CIFS/NAS]
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Lab2 --> Shared
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Lab3 --> Shared
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style Hub stroke:#f59e0b,stroke-width:3px
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style Traefik stroke:#0284c7,stroke-width:3px
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style Auth stroke:#10b981,stroke-width:3px
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style Spawner stroke:#a855f7,stroke-width:3px
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style Lab1 stroke:#3b82f6,stroke-width:2px
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style Lab2 stroke:#3b82f6,stroke-width:2px
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style Lab3 stroke:#3b82f6,stroke-width:2px
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style Shared stroke:#ef4444,stroke-width:2px
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```
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Users access JupyterHub through Traefik reverse proxy with TLS termination. After authentication via NativeAuthenticator, JupyterHub spawns isolated JupyterLab containers per user using DockerSpawner. Each user gets dedicated persistent volumes for home directory, workspace files, and cache data, with optional shared storage for collaborative datasets.
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## Configuration Flow
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```mermaid
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graph TB
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subgraph ENV["Environment Variables (compose.yml)"]
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ADMIN[JUPYTERHUB_ADMIN<br/>Admin username]
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BASEURL[JUPYTERHUB_BASE_URL<br/>URL prefix]
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IMG[JUPYTERHUB_NOTEBOOK_IMAGE<br/>User container image]
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NET[JUPYTERHUB_NETWORK_NAME<br/>Container network]
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SSL[JUPYTERHUB_SSL_ENABLED<br/>0=off, 1=on]
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GPU[JUPYTERHUB_GPU_ENABLED<br/>0=off, 1=on, 2=auto]
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SIGNUP[JUPYTERHUB_SIGNUP_ENABLED<br/>0=admin-only, 1=self-register]
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TFLOG[TF_CPP_MIN_LOG_LEVEL<br/>TensorFlow verbosity]
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NVIMG[JUPYTERHUB_NVIDIA_IMAGE<br/>CUDA test image]
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subgraph SVCEN["JUPYTERHUB_SERVICE_*<br/>Passed to Lab as env"]
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direction LR
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MLF[JUPYTERHUB_SERVICE_MLFLOW]
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RES[JUPYTERHUB_SERVICE_RESOURCES_MONITOR]
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TNS[JUPYTERHUB_SERVICE_TENSORBOARD]
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SVC_MORE[...]
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end
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end
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subgraph CONFIG["jupyterhub_config.py"]
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AUTH[NativeAuthenticator<br/>open_signup=False]
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SPAWN[DockerSpawner<br/>spawner_class, remove=True]
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NBDIR[DOCKER_NOTEBOOK_DIR<br/>/home/lab/workspace]
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VOLS[DOCKER_SPAWNER_VOLUMES<br/>home/workspace/cache/shared]
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VOLDESC[VOLUME_DESCRIPTIONS<br/>Optional UI labels]
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GROUPS[BUILTIN_GROUPS<br/>docker-sock, docker-privileged]
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HOOK[pre_spawn_hook<br/>Group check + privileges]
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HANDLERS[extra_handlers<br/>ManageVolumes, RestartServer, Notifications]
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TEMPLATES[template_paths<br/>Custom + Native + Default]
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end
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subgraph RUNTIME["Spawned User Container"]
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LAB[JupyterLab Server<br/>Port 8888]
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SERVICES[Services: MLflow, Glances, TensorBoard<br/>Controlled by ENABLE_SERVICE_* env]
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GPUACCESS[GPU Access<br/>device_requests if enabled]
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end
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ADMIN --> AUTH
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SIGNUP --> |enable_signup| AUTH
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BASEURL --> CONFIG
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IMG --> SPAWN
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NET --> SPAWN
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SSL --> CONFIG
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TFLOG --> |Passed as env| LAB
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NVIMG --> |Used for auto-detect| CONFIG
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GPU --> |Auto-detect via nvidia-smi| SPAWN
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GPU --> |Passed as env| LAB
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GPU --> |device_requests| GPUACCESS
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SVCEN --> |Passed as env| LAB
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SVCEN --> |Controls startup| SERVICES
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AUTH --> |Validates| SPAWN
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SPAWN --> |Creates| LAB
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NBDIR --> SPAWN
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VOLS --> |Mounts| LAB
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VOLDESC --> HANDLERS
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GROUPS --> HOOK
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HOOK --> |Conditionally mounts<br/>docker.sock| LAB
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HANDLERS --> |API endpoints| LAB
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TEMPLATES --> |Custom UI| LAB
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style ENV stroke:#f59e0b,stroke-width:3px
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style SVCEN stroke:#a855f7,stroke-width:2px
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style CONFIG stroke:#10b981,stroke-width:3px
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style RUNTIME stroke:#3b82f6,stroke-width:3px
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style HOOK stroke:#ef4444,stroke-width:2px
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style HANDLERS stroke:#ef4444,stroke-width:2px
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```
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Environment variables defined in `compose.yml` are consumed by `config/jupyterhub_config.py` to configure authentication, spawner behavior, and GPU detection. The configuration defines `DOCKER_SPAWNER_VOLUMES` for persistent storage, `VOLUME_DESCRIPTIONS` for optional UI labels, and `BUILTIN_GROUPS` for protected group management. When spawning user containers, these settings control which services are enabled (MLflow, Glances, TensorBoard), whether GPU access is granted via `device_requests`, and what volumes are mounted. The pre-spawn hook checks user group membership against `BUILTIN_GROUPS` to conditionally mount docker.sock for privileged users.
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## GPU Auto-Detection
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```mermaid
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graph LR
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START[JUPYTERHUB_GPU_ENABLED=2] --> CHECK{Check value}
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CHECK -->|0| DISABLED[GPU Disabled]
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CHECK -->|1| ENABLED[GPU Enabled]
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CHECK -->|2| DETECT[Auto-detect]
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DETECT --> SPAWN[Spawn test container<br/>nvidia/cuda:13.0.2-base]
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SPAWN --> RUN[Execute nvidia-smi<br/>with runtime=nvidia]
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RUN --> SUCCESS{Success?}
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SUCCESS -->|Yes| SET_ON[Set JUPYTERHUB_GPU_ENABLED=1<br/>Set NVIDIA_DETECTED=1]
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SUCCESS -->|No| SET_OFF[Set JUPYTERHUB_GPU_ENABLED=0<br/>Set NVIDIA_DETECTED=0]
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SET_ON --> CLEANUP1[Remove test container<br/>jupyterhub_nvidia_autodetect]
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SET_OFF --> CLEANUP2[Remove test container<br/>jupyterhub_nvidia_autodetect]
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CLEANUP1 --> APPLY_ON[Apply device_requests<br/>to spawned containers]
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CLEANUP2 --> APPLY_OFF[No GPU access<br/>for spawned containers]
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ENABLED --> APPLY_ON
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DISABLED --> APPLY_OFF
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style START stroke:#f59e0b,stroke-width:3px
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style DETECT stroke:#a855f7,stroke-width:3px
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style SET_ON stroke:#10b981,stroke-width:2px
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style SET_OFF stroke:#ef4444,stroke-width:2px
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style APPLY_ON stroke:#10b981,stroke-width:3px
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style APPLY_OFF stroke:#6b7280,stroke-width:2px
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```
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When `JUPYTERHUB_GPU_ENABLED=2` (auto-detect mode), JupyterHub spawns a temporary CUDA container running `nvidia-smi` with `runtime=nvidia`. If the command succeeds, GPU support is enabled and `device_requests` are added to spawned user containers. If it fails, GPU support is disabled. The test container is always removed after detection. Manual override is possible by setting `JUPYTERHUB_GPU_ENABLED=1` (force enable) or `JUPYTERHUB_GPU_ENABLED=0` (force disable).
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## User Self-Service Workflow
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```mermaid
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graph LR
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HOME[Home Page] --> RUNNING{Server State}
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RUNNING -->|Running| RESTART[Restart Server<br/>container.restart]
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RUNNING -->|Stopped| START[Start Server<br/>spawner.start]
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RUNNING -->|Stopped| VOLUMES[Manage Volumes<br/>Select + Delete]
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RESTART --> |Docker API| REFRESH1[Page Refresh]
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VOLUMES --> |Docker API| DELETE[volume.remove]
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DELETE --> REFRESH2[Page Refresh]
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style HOME stroke:#0284c7,stroke-width:3px
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style RESTART stroke:#10b981,stroke-width:2px
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style VOLUMES stroke:#ef4444,stroke-width:2px
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style START stroke:#a855f7,stroke-width:2px
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```
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Users manage their servers through the home page. Running servers can be restarted via Docker API without recreation. Stopped servers can be started normally or have volumes selectively deleted through a modal interface presenting checkboxes for home, workspace, and cache volumes with optional descriptions from configuration.
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Administrators can manage volumes for any user directly from the admin panel (`/hub/admin`). Each user row displays a database icon button that opens the same volume selection modal, allowing admins to reset volumes without accessing individual user home pages.
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## Volume Architecture
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```mermaid
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graph TB
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subgraph HOST["Docker Host"]
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VOLHOME1["jupyterlab-user1_home<br/>Docker Volume"]
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VOLWORK1["jupyterlab-user1_workspace<br/>Docker Volume"]
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VOLCACHE1["jupyterlab-user1_cache<br/>Docker Volume"]
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VOLHOME2["jupyterlab-user2_home<br/>Docker Volume"]
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VOLWORK2["jupyterlab-user2_workspace<br/>Docker Volume"]
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VOLCACHE2["jupyterlab-user2_cache<br/>Docker Volume"]
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VOLSHARED["jupyterhub_shared<br/>Docker Volume - Shared"]
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end
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VOLHOME1 -.->|Mount| M1HOME
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VOLWORK1 -.->|Mount| M1WORK
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VOLCACHE1 -.->|Mount| M1CACHE
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VOLHOME2 -.->|Mount| M2HOME
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VOLWORK2 -.->|Mount| M2WORK
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VOLCACHE2 -.->|Mount| M2CACHE
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VOLSHARED --> MSHARED
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subgraph CONTAINER1["User Container: user1"]
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M1HOME["/home"]
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M1WORK["/home/lab/workspace"]
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M1CACHE["/home/lab/.cache"]
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end
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subgraph CONTAINER2["User Container: user2"]
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M2HOME["/home"]
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M2WORK["/home/lab/workspace"]
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M2CACHE["/home/lab/.cache"]
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end
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MSHARED["/mnt/shared<br/>Shared across all users"]
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MSHARED ----> CONTAINER1
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MSHARED ----> CONTAINER2
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style HOST stroke:#f59e0b,stroke-width:3px
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style CONTAINER1 stroke:#3b82f6,stroke-width:3px
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style CONTAINER2 stroke:#3b82f6,stroke-width:3px
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style VOLSHARED stroke:#10b981,stroke-width:3px
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style MSHARED stroke:#10b981,stroke-width:3px
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```
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Each user receives four persistent volumes. Three user-specific volumes store home directory files, workspace projects, and cache data. The shared volume provides collaborative storage accessible across all user environments. Volume names follow the pattern `jupyterlab-{username}_<suffix>` for per-user isolation. The shared volume can be configured as CIFS mount for NAS integration.
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Users can selectively reset their personal volumes (home, workspace, cache) at any time through the Manage Volumes feature when their server is stopped. The shared volume cannot be reset by individual users as it contains collaborative data accessible to all users.
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## References
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This project spawns user environments using docker image: [stellars/stellars-jupyterlab-ds](https://hub.docker.com/r/stellars/stellars-jupyterlab-ds)
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Visit the project page for stellars-jupyterlab-ds: https://github.com/stellarshenson/stellars-jupyterlab-ds
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## Requirements
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**Docker Socket Access Required**: This JupyterHub implementation requires read-write access to the Docker socket (`/var/run/docker.sock`) mounted into the JupyterHub container. This is essential for:
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- **DockerSpawner**: Spawning and managing isolated JupyterLab containers for each user
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- **Volume Management**: Allowing users to reset their persistent volumes (home/workspace/cache)
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- **Container Control**: Enabling server restart functionality from the user control panel
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- **Docker Access**: Supporting docker.sock and privileged mode for trusted users within their JupyterLab environments
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The `compose.yml` file includes this mount by default:
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```yaml
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volumes:
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- /var/run/docker.sock:/var/run/docker.sock:rw
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```
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> [!WARNING]
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> The JupyterHub container has full access to the Docker daemon. Only trusted administrators should have access to JupyterHub configuration.
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## Quickstart
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### Docker Compose
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1. Download `compose.yml` and `config/jupyterhub_config.py` config file
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2. Run: `docker compose up --no-build`
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3. Open https://localhost/jupyterhub in your browser
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4. Add `admin` user through self-sign-in (user will be authorised automatically)
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5. Log in as `admin`
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### Start Scripts
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- `start.sh` or `start.bat` – standard startup for the environment
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- `scripts/build.sh` alternatively `make build` – builds required Docker containers
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### Authentication
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This stack uses [NativeAuthenticator](https://github.com/jupyterhub/nativeauthenticator) for user management. Admins can whitelist users or allow self-registration. Passwords are stored securely.
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## Deployment Notes
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- Ensure `config/jupyterhub_config.py` is correctly set for your environment (e.g., TLS, admin list).
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- Optional volume mounts and configuration can be modified in `jupyterhub_config.py` for shared storage.
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## Customisation
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You should customise the deployment by creating a `compose_override.yml` file.
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#### Custom configuration file
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Example below introduces custom config file `jupyterhub_config_override.py` to use for your deployment:
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```yaml
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services:
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jupyterhub:
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volumes:
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- ./config/jupyterhub_config_override.py:/srv/jupyterhub/jupyterhub_config.py:ro # config file (read only)
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```
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#### Enable GPU
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No changes required in the configuration if you allow NVidia autodetection to be performed.
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Otherwise change the `JUPYTERHUB_GPU_ENABLED=1`
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Changes in your `compose_override.yml`:
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```yaml
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services:
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jupyterhub:
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environment:
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- JUPYTERHUB_GPU_ENABLED=1 # enable NVIDIA GPU, values: 0 - disabled, 1 - enabled, 2 - auto-detect
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```
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#### Disable self-registration
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By default, users can self-register and require admin approval. To disable self-registration entirely (admin must create users via `/hub/admin`):
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```yaml
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services:
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jupyterhub:
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environment:
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- JUPYTERHUB_SIGNUP_ENABLED=0 # disable self-registration, admin creates users
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```
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#### Idle Server Culler
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Automatically stop user servers after a period of inactivity to free up resources. Disabled by default.
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```yaml
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services:
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jupyterhub:
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environment:
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- JUPYTERHUB_IDLE_CULLER_ENABLED=1 # enable idle culler
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- JUPYTERHUB_IDLE_CULLER_TIMEOUT=86400 # 24 hours (default) - stop after this many seconds of inactivity
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- JUPYTERHUB_IDLE_CULLER_INTERVAL=600 # 10 minutes (default) - how often to check for idle servers
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- JUPYTERHUB_IDLE_CULLER_MAX_AGE=0 # 0 (default) - max server age regardless of activity (0=unlimited)
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- JUPYTERHUB_IDLE_CULLER_MAX_EXTENSION=24 # 24 hours (default) - max hours users can extend their session
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```
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**Behavior**:
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- `JUPYTERHUB_IDLE_CULLER_TIMEOUT`: Server is stopped after this many seconds without activity. Active servers are never culled
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- `JUPYTERHUB_IDLE_CULLER_MAX_AGE`: Force stop servers older than this (useful to force image updates). Set to 0 to disable
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- `JUPYTERHUB_IDLE_CULLER_MAX_EXTENSION`: Maximum total hours a user can extend their session. Users see a "Session Status" card on the home page showing time remaining and can request extensions up to this limit. Extension allowance resets when server restarts
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#### Activity Monitor
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Admin-only dashboard at `/hub/activity` showing real-time resource usage and user engagement metrics.
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```yaml
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services:
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jupyterhub:
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environment:
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- JUPYTERHUB_ACTIVITYMON_SAMPLE_INTERVAL=600 # 10 minutes (default) - how often to record samples
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- JUPYTERHUB_ACTIVITYMON_RETENTION_DAYS=7 # 7 days (default) - how long to keep samples
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- JUPYTERHUB_ACTIVITYMON_HALF_LIFE=72 # 72 hours / 3 days (default) - decay half-life for scoring
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- JUPYTERHUB_ACTIVITYMON_INACTIVE_AFTER=60 # 60 minutes (default) - threshold for inactive status
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- JUPYTERHUB_ACTIVITYMON_VOLUMES_UPDATE_INTERVAL=3600 # 1 hour (default) - how often to refresh volume sizes
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```
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**Features**:
|
||
- **3-state status**: Green (online + active within 60 min), Yellow (online + inactive), Red (offline)
|
||
- **Resource metrics**: Real-time CPU and memory usage per container (fetched in parallel to avoid blocking)
|
||
- **Volume sizes**: Total storage per user with hover tooltip showing per-volume breakdown (home/workspace/cache). Refreshed hourly in background
|
||
- **Activity score**: Weighted average of historical activity using exponential decay (recent activity counts more)
|
||
- **Reset button**: Clear all historical samples to start fresh
|
||
|
||
**Scoring**:
|
||
- Score is calculated only from measured samples (unmeasured periods don't count against users)
|
||
- Uses exponential decay: `weight = exp(-lambda * age_hours)` where `lambda = ln(2) / half_life`
|
||
- Score = ratio of weighted active samples to weighted total samples (0-100%)
|
||
|
||
#### Custom Branding
|
||
|
||
Replace the default JupyterHub logo with a custom logo. Mount your logo file and set the path:
|
||
|
||
```yaml
|
||
services:
|
||
jupyterhub:
|
||
environment:
|
||
- JUPYTERHUB_LOGO_URI=file:///srv/jupyterhub/logo.svg
|
||
volumes:
|
||
- ./logo.svg:/srv/jupyterhub/logo.svg:ro
|
||
```
|
||
|
||
Supported formats: SVG, PNG, JPG. The default path `/srv/jupyterhub/logo.svg` is used if file exists.
|
||
|
||
#### Enable shared CIFS mount
|
||
|
||
Changes in your `compose_override.yml`:
|
||
```yaml
|
||
jupyterhub:
|
||
volumes:
|
||
- ./config/jupyterhub_config_override.py:/srv/jupyterhub/jupyterhub_config.py:ro # config file (read only)
|
||
- jupyterhub_shared_nas:/mnt/shared # cifs share
|
||
|
||
volumes:
|
||
# remote drive for large datasets
|
||
jupyterhub_shared_nas:
|
||
driver: local
|
||
name: jupyterhub_shared_nas
|
||
driver_opts:
|
||
type: cifs
|
||
device: //nas_ip_or_dns_name/data
|
||
o: username=xxxx,password=yyyy,uid=1000,gid=1000
|
||
```
|
||
|
||
in the config file you will refer to this volume by its name `jupyterhub_shared_nas`:
|
||
|
||
```python
|
||
# User mounts in the spawned container
|
||
c.DockerSpawner.volumes = {
|
||
"jupyterlab-{username}_home": "/home",
|
||
"jupyterlab-{username}_workspace": DOCKER_NOTEBOOK_DIR,
|
||
"jupyterlab-{username}_cache": "/home/lab/.cache",
|
||
"jupyterhub_shared_nas": "/mnt/shared"
|
||
}
|
||
```
|
||
|
||
#### Docker Access Control Groups
|
||
|
||
> [!WARNING]
|
||
> Both groups grant significant privileges. `docker-sock` provides Docker host control. `docker-privileged` provides full container privileges. Only grant to trusted users.
|
||
|
||
Two built-in groups control Docker access levels:
|
||
|
||
- **`docker-sock`**: Mounts `/var/run/docker.sock` into the user container. Enables Docker CLI, container orchestration, image builds, and Docker Compose operations
|
||
- **`docker-privileged`**: Runs user container with `--privileged` flag. Enables hardware access, loading kernel modules, nested virtualization, and operations requiring elevated capabilities
|
||
|
||
**How to Grant Access**:
|
||
|
||
1. Admin Panel → Groups (`/hub/admin`)
|
||
2. Click on `docker-sock` or `docker-privileged` group
|
||
3. Add users to the group
|
||
4. Users restart their server for changes to take effect
|
||
|
||
**Technical Details**:
|
||
|
||
Both groups are built-in protected groups (auto-recreated if deleted). Pre-spawn hook (`config/jupyterhub_config.py::pre_spawn_hook`) checks membership before spawning containers.
|
||
|
||
<!-- EOF -->
|