Stellars JupyterHub for Data Science Platform

Multi-user JupyterHub 4 with Miniforge, Data Science stack, and NativeAuthenticator.

This platform is built to support multiple data scientists on a shared environment with isolated sessions. Powered by JupyterHub, it ensures secure, user-specific access via the NativeAuthenticator plugin. It includes a full data science stack with GPU support (optional), and integrates seamlessly into modern Docker-based workflows.

By default system is capable of automatically detecting NVIDIA CUDA-supported GPU

This deployment provides access to a centralized JupyterHub instance for managing user sessions. Optional integrations such as TensorBoard, MLFlow, or Optuna can be added manually via service extensions.

Architecture

graph TB
    User[User Browser] -->|HTTPS| Traefik[Traefik Proxy<br/>TLS Termination]
    Traefik --> Hub[JupyterHub<br/>Port 8000]

    Hub -->|Authenticates| Auth[NativeAuthenticator<br/>User Management]
    Hub -->|Spawns via| Spawner[DockerSpawner]

    Spawner -->|Creates| Lab1[JupyterLab<br/>User: alice]
    Spawner -->|Creates| Lab2[JupyterLab<br/>User: bob]
    Spawner -->|Creates| Lab3[JupyterLab<br/>User: charlie]

    Lab1 -->|Mounts| Vol1[alice_home<br/>alice_workspace<br/>alice_cache]
    Lab2 -->|Mounts| Vol2[bob_home<br/>bob_workspace<br/>bob_cache]
    Lab3 -->|Mounts| Vol3[charlie_home<br/>charlie_workspace<br/>charlie_cache]

    Lab1 -->|Shared| Shared[jupyterhub_shared<br/>CIFS/NAS Optional]
    Lab2 -->|Shared| Shared
    Lab3 -->|Shared| Shared

    style Hub stroke:#f59e0b,stroke-width:3px
    style Traefik stroke:#0284c7,stroke-width:3px
    style Auth stroke:#10b981,stroke-width:3px
    style Spawner stroke:#a855f7,stroke-width:3px
    style Lab1 stroke:#3b82f6,stroke-width:2px
    style Lab2 stroke:#3b82f6,stroke-width:2px
    style Lab3 stroke:#3b82f6,stroke-width:2px
    style Shared stroke:#ef4444,stroke-width:2px

Users access JupyterHub through Traefik reverse proxy with TLS termination. After authentication via NativeAuthenticator, JupyterHub spawns isolated JupyterLab containers per user using DockerSpawner. Each user gets dedicated persistent volumes for home directory, workspace files, and cache data, with optional shared storage for collaborative datasets.

User Interface

Restart running JupyterLab container directly from the user control panel

Access volume management when server is stopped

Select individual volumes to reset - home directory, workspace files, or cache data

Features

• GPU Auto-Detection: Automatic NVIDIA CUDA GPU detection and configuration for spawned user containers
• User Self-Service: Users can restart their JupyterLab containers and selectively reset persistent volumes (home/workspace/cache) without admin intervention
• Privileged Access Control: Group-based docker.sock access for trusted users enabling container orchestration from within JupyterLab
• Isolated Environments: Each user gets dedicated JupyterLab container with persistent volumes via DockerSpawner
• Native Authentication: Built-in user management with NativeAuthenticator supporting self-registration and admin approval
• Shared Storage: Optional CIFS/NAS mount support for shared datasets across all users
• Production Ready: Traefik reverse proxy with TLS termination, automatic container updates via Watchtower

References

This project spawns user environments using docker image: stellars/stellars-jupyterlab-ds

Visit the project page for stellars-jupyterlab-ds: https://github.com/stellarshenson/stellars-jupyterlab-ds

Quickstart

Docker Compose

1. Download compose.yml and config/jupyterhub_config.py config file
2. Run: docker compose up --no-build
3. Open https://localhost/jupyterhub in your browser
4. Add admin user through self-sign-in (user will be authorised automatically)
5. Log in as admin

Start Scripts

• start.sh or start.bat – standard startup for the environment
• scripts/build.sh alternatively make build – builds required Docker containers

Authentication

This stack uses NativeAuthenticator for user management. Admins can whitelist users or allow self-registration. Passwords are stored securely.

Deployment Notes

• Ensure config/jupyterhub_config.py is correctly set for your environment (e.g., TLS, admin list).
• Optional volume mounts and configuration can be modified in jupyterhub_config.py for shared storage.

Customisation

You should customise the deployment by creating a compose_override.yml file.

Custom configuration file

Example below introduces custom config file jupyterhub_config_override.py to use for your deployment:

services:
  jupyterhub:
    volumes:
      - ./config/jupyterhub_config_override.py:/srv/jupyterhub/jupyterhub_config.py:ro # config file (read only)

Enable GPU

No changes required in the configuration if you allow NVidia autodetection to be performed. Otherwise change the ENABLE_GPU_SUPPORT = 1

Changes in your compose_override.yml:

services:
  jupyterhub:
    environment:
      - ENABLE_GPU_SUPPORT=1 # enable NVIDIA GPU, values: 0 - disabled, 1 - enabled, 2 - auto-detect

Enable shared CIFS mount

Changes in your compose_override.yml:

  jupyterhub:
    volumes:
      - ./config/jupyterhub_config_override.py:/srv/jupyterhub/jupyterhub_config.py:ro # config file (read only)
      - jupyterhub_shared_nas:/mnt/shared # cifs share
    
volumes:
  # remote drive for large datasets
  jupyterhub_shared_nas:
    driver: local
    name: jupyterhub_shared_nas
    driver_opts:
      type: cifs
      device: //nas_ip_or_dns_name/data
      o: username=xxxx,password=yyyy,uid=1000,gid=1000

in the config file you will refer to this volume by its name jupyterhub_shared_nas:

# User mounts in the spawned container
c.DockerSpawner.volumes = {
    "jupyterlab-{username}_home": "/home",
    "jupyterlab-{username}_workspace": DOCKER_NOTEBOOK_DIR,
    "jupyterlab-{username}_cache": "/home/lab/.cache",
    "jupyterhub_shared_nas": "/mnt/shared"
}

Grant Docker Socket Access to Privileged Users

Security Warning: Docker socket access grants effective root-level control over the host system. Only grant this permission to trusted users.

The platform supports granting specific users read-write access to /var/run/docker.sock within their JupyterLab containers. This enables container orchestration, Docker builds, and Docker Compose operations from within user environments.

How to Grant Access:

1. Log in as admin and navigate to Admin Panel (https://localhost/jupyterhub/hub/admin)
2. Click "Groups" in the navigation
3. Click on the docker-privileged group (automatically created at startup)
4. Add users who need docker.sock access to this group
5. Users must restart their server (Stop My Server -> Start My Server) for changes to take effect

Technical Details:

The docker-privileged group is a built-in protected group that cannot be permanently deleted. It is automatically created at JupyterHub startup and recreated before every container spawn if missing. A pre-spawn hook (config/jupyterhub_config.py::pre_spawn_hook) checks user group membership before spawning containers. Users in the docker-privileged group will have /var/run/docker.sock mounted with read-write permissions in their JupyterLab environment.

Use Cases:

• Building custom Docker images from within JupyterLab
• Running Docker Compose stacks for local development
• Container orchestration and management tasks
• Advanced DevOps workflows requiring Docker API access